Atomic Structure and Symbolism

Atomic Scale and Composition

Atoms are extremely small and mostly empty space.

The Stadium Analogy: If an atom were the size of a professional football stadium, the nucleus would be a marble on the 50-yard line. The electrons would be like tiny gnats buzzing throughout the rest of the stadium's volume.
Particle Charge Mass (amu) Key Note
Proton +1 1.0073 Determines Identity
Neutron 0 1.0087 Determines Isotope
Electron -1 0.00055 Mass is Negligible
Size Constants:
  • Atom Diameter: ~10-10 m
  • Nuclear Diameter: ~10-15 m
Mass Constants:
  • 1 amu = 1.6605 x 10-24 g
  • 1 Proton = ~2000x heavier than an electron

 

So, the majority of the mass of an atom comes only from the proton(s) and neutron(s) present in the nucleus. Electron mass is negligible.

Clinical Connection

This "empty space" is what allows X-rays to pass through your body to create diagnostic images!

The charge of an atom comes only from protons and electrons, so a neutral atom has #protons = #electrons.

Each element on the Periodic Table has a unique atomic number (Z), which tells the number of protons in the nucleus. The number tells us which element it is.

The total number of protons + neutrons in an atom is the mass number (A). Therefore, the number of neutrons in an atom is the difference: #neutrons = A – Z

Isotopes

An atom of a specific element always has the same number of protons, but the number of neutrons can differ between atoms of the same element – these are called isotopes.

If you look at the periodic table, Bromine has an atomic mass of approximately 80. However, if you could shrink down and weigh every bromine atom on Earth, you would almost never find one that actually weighs 80.

Bromine exists in nature as a nearly 50/50 mix of two isotopes:

  • Bromine-79: Contains 35 protons and 44 neutrons. (Approx. 50.7% of all Br)

  • Bromine-81: Contains 35 protons and 46 neutrons. (Approx. 49.3% of all Br)

 

Ions

In a chemical reaction, the number of protons and/or neutrons in an atom’s nucleus never change. However, the number of electrons outside the nucleus CAN change.

In a neutral atom, #protons = #electrons.

When an atom gains or loses one or more electrons, the charge balance is upset and an ion is formed.

  • Losing one or more electrons causes the atom to be +
  • Gaining one or more electrons causes the atom to be –
  • A positive ion is a cation
  • A negative ion is an anion

The Math of Ion Formation

Think of an atom as a mathematical ledger. The net charge is simply the balance between positive protons and negative electrons.

Losing Electrons = Positive (+)

When you subtract a negative, the result is positive.

0 - (-1) = +1

Clinical Example: Sodium (Na+) loses an electron to become a cation, essential for nerve impulses.

Gaining Electrons = Negative (-)

When you add a negative, the result is negative.

0 + (-1) = -1

Clinical Example: Chloride (Cl-) gains an electron to become an anion, critical for fluid balance.

 

Symbolism

Each element on the Periodic Table has a chemical symbol, a one- or two-letter designation. The first letter is always capitalized, the second (if there is one) is always lower-case.

This is important to avoid confusion of chemical symbols with simple compounds or common acronyms and to avoid confusion when writing chemical formulas of more complex molecules.

  • CO is carbon monoxide, Co is cobalt
  • HCl is hydrogen chloride; HCL make no sense
  • Mn in manganese, MN is Minnesota
  • CoCl2 is cobalt chloride (a metal salt); COCl2 is phosgene, an extremely toxic gas (if you can smell it, you’re already dead)

While the number of protons defines an element, the number of neutrons can vary. These variations are called isotopes.

Common Isotope Notation:
  • Carbon-12: 12C (6 Protons + 6 Neutrons)
  • Carbon-13: 13C (6 Protons + 7 Neutrons)
  • Carbon-14: 14C (6 Protons + 8 Neutrons)

Why is the Atomic Mass a Decimal?

The mass shown on the Periodic Table is a weighted average of all naturally occurring isotopes. Here is how the math works for Carbon:

(12 amu × 0.985) + (13 amu × 0.015) = 12.01 amu
(Mass of Isotope A × % Abundance) + (Mass of Isotope B × % Abundance)
Clinical Insight: Isotopes are used in diagnostic imaging. For example, radioactive isotopes like Iodine-131 or Technetium-99m act chemically like their "normal" counterparts but allow us to track metabolic activity in the body.

See example 2.4 pp 77-78

2.3 Atomic Structure and Symbolism

Review/try problems 11, 17, 19, and 23